Transcript: lnc-PADI1-1:10

Basic information

LNCipedia transcript ID: lnc-PADI1-1:10 
LNCipedia gene ID: lnc-PADI1-1
Location (hg38): chr1:17192642-17197695
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2038 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000204362.5|ENCT00000002168.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -22.2057 non-coding 
CPAT coding probability 5.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PADI1-1:10 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PADI1-1:10
5.0 lnc-PADI1-1:10
5.1 lnc-SZRD1-47:10
5.2 lnc-PADI1-1:10