Transcript: lnc-PADI1-1:2

Basic information

LNCipedia transcript ID: lnc-PADI1-1:2 
LNCipedia gene ID: lnc-PADI1-1
Location (hg38): chr1:17189783-17197617
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4600 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000539219; ENST00000539219.1; RP11-380J14.1-201; NONHSAT001237
Alternative gene names: ENSG00000204362; RP11-380J14.1; ENSG00000204362.4; OTTHUMG00000002291.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.2057 non-coding 
CPAT coding probability 33.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PADI1-1:2 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PADI1-1:2
3.1 lnc-PADI1-1:2
4.0 lnc-PADI1-1:2
4.1 lnc-PADI1-1:2
5.0 lnc-PADI1-1:2
5.1 lnc-SZRD1-47:2
5.2 lnc-PADI1-1:2