Transcript: lnc-PADI1-3:2

Basic information

LNCipedia transcript ID: lnc-PADI1-3:2 
LNCipedia gene ID: lnc-PADI1-3
Location (hg38): chr1:16855407-16859284
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 882 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000414128.1; RP11-108M9.2-001; OTTHUMT00000006253.1
Alternative gene names: ENSG00000230239.1; RP11-108M9.2; OTTHUMG00000002202.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.3411 non-coding 
CPAT coding probability 2.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PADI1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CROCC-3:1
4.0 lnc-CROCC-3:1
4.1 lnc-CROCC-3:1
5.0 lnc-CROCC-3:1
5.1 lnc-SZRD1-27:1
5.2 lnc-PADI1-3:2