Transcript: lnc-PADI1-4:2

Basic information

LNCipedia transcript ID: lnc-PADI1-4:2 
LNCipedia gene ID: lnc-PADI1-4
Ensembl Gene ID: ENSG00000228549
Ensembl Transcript ID: ENST00000619677
Location (hg38): chr1:16871761-16872591
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 828 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619677.1
Alternative gene names: ENSG00000228549.3; RP11-108M9.3; BX284668.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.3932 non-coding 
CPAT coding probability 64.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PADI1-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CROCC-1:5
4.1 lnc-CROCC-1:5
5.0 lnc-CROCC-1:5
5.1 lnc-SZRD1-28:2
5.2 lnc-PADI1-4:2