Transcript: lnc-PADI1-4:5

Basic information

LNCipedia transcript ID: lnc-PADI1-4:5 
LNCipedia gene ID: lnc-PADI1-4
Ensembl Gene ID: ENSG00000228549
Ensembl Transcript ID: ENST00000457856
Location (hg38): chr1:16873039-16874092
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 475 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457856.1; RP11-108M9.3-004; OTTHUMT00000006257.1; NONHSAT001212
Alternative gene names: ENSG00000228549.1; RP11-108M9.3; OTTHUMG00000002203.1; ENSG00000228549.2; U1; ENSG00000228549.3; BX284668.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.5912 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PADI1-4:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CROCC-1:4
4.0 lnc-CROCC-1:4
4.1 lnc-CROCC-1:4
5.0 lnc-CROCC-1:4
5.1 lnc-SZRD1-28:5
5.2 lnc-PADI1-4:5