Transcript: lnc-PADI2-2:1

Basic information

LNCipedia transcript ID: lnc-PADI2-2:1 
LNCipedia gene ID: lnc-PADI2-2
Ensembl Gene ID: ENSG00000282843
Ensembl Transcript ID: ENST00000635428
Location (hg38): chr1:17193232-17201733
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1228 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635428.1
Alternative gene names: ENSG00000282843.1; RP11-380J14.4; AL590644.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -66.0184 non-coding 
CPAT coding probability 12.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PADI2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PADI2-2:1
4.1 lnc-PADI2-2:1
5.0 lnc-PADI2-2:1
5.1 lnc-CAMK2N1-33:1
5.2 lnc-PADI2-2:1