Transcript: lnc-PAFAH1B1-3:4

Basic information

LNCipedia transcript ID: lnc-PAFAH1B1-3:4 
LNCipedia gene ID: lnc-PAFAH1B1-3
Location (hg38): chr17:2512021-2569442
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1227 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000030450.1|FTMT26700027862.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -53.4784 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAFAH1B1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PAFAH1B1-3:4
5.0 lnc-PAFAH1B1-3:4
5.1 lnc-RPA1-34:1
5.2 lnc-PAFAH1B1-3:4