Transcript: lnc-PAGR1-2:10

Basic information

LNCipedia transcript ID: lnc-PAGR1-2:10 
LNCipedia gene ID: lnc-PAGR1-2
Location (hg38): chr16:29745279-29750497
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2127 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000501801; NONHSAT141626
Alternative gene names: ENSG00000246710; AC009133.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 46.6504 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PAGR1-2:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZG16-1:1
3.1 lnc-ZG16-2:2
4.0 lnc-ZG16-2:2
4.1 lnc-C16orf53-2:11
5.0 lnc-C16orf53-2:11
5.1 lnc-PRRT2-5:10
5.2 lnc-PAGR1-2:10