Transcript: lnc-PAGR1-2:4

Basic information

LNCipedia transcript ID: lnc-PAGR1-2:4 
LNCipedia gene ID: lnc-PAGR1-2
Location (hg38): chr16:29709205-29834567
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 3790 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260719.1|ENCT00000157906.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.9312 non-coding 
CPAT coding probability 6.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAGR1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C16orf53-2:5
5.0 lnc-C16orf53-2:5
5.1 lnc-PRRT2-5:4
5.2 lnc-PAGR1-2:4