Transcript: lnc-PAGR1-2:5

Basic information

LNCipedia transcript ID: lnc-PAGR1-2:5 
LNCipedia gene ID: lnc-PAGR1-2
Ensembl Gene ID: ENSG00000260719
Ensembl Transcript ID: ENST00000565600
Location (hg38): chr16:29745247-29748299
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1656 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565600.1; AC009133.17-001; OTTHUMT00000435522.1; NONHSAT141625
Alternative gene names: ENSG00000260719.1; AC009133.17; OTTHUMG00000177138.1; AC009133.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.0642 non-coding 
CPAT coding probability 10.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAGR1-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZG16-2:1
4.0 lnc-ZG16-2:1
4.1 lnc-C16orf53-2:6
5.0 lnc-C16orf53-2:6
5.1 lnc-PRRT2-5:5
5.2 lnc-PAGR1-2:5