Transcript: lnc-PAGR1-2:6

Basic information

LNCipedia transcript ID: lnc-PAGR1-2:6 
LNCipedia gene ID: lnc-PAGR1-2
Location (hg38): chr16:29745247-29748299
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1656 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260719.1|ENST00000565600.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.0642 non-coding 
CPAT coding probability 5.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAGR1-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C16orf53-2:7
5.0 lnc-C16orf53-2:7
5.1 lnc-PRRT2-5:6
5.2 lnc-PAGR1-2:6