Transcript: lnc-PAK5-2:1

Basic information

LNCipedia transcript ID: lnc-PAK5-2:1 
LNCipedia gene ID: lnc-PAK5-2
Location (hg38): chr20:9394558-9398131
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3058 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000054209.1|MICT00000213538.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 83.8127 coding 
CPAT coding probability 17.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PAK5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PAK7-2:1
5.0 lnc-PAK7-2:1
5.1 lnc-MKKS-11:1
5.2 lnc-PAK5-2:1