Transcript: lnc-PAK6-1:2

Basic information

LNCipedia transcript ID: lnc-PAK6-1:2 
LNCipedia gene ID: lnc-PAK6-1
Location (hg38): chr15:40232082-40236107
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3902 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000568093.1; RP11-133K1.7-001; OTTHUMT00000434230.1; NONHSAT041816
Alternative gene names: ENSG00000260648.1; RP11-133K1.7; OTTHUMG00000176889.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.7331 non-coding 
CPAT coding probability 42.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PAK6-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BUB1B-1:1
4.0 lnc-BUB1B-1:1
4.1 lnc-BUB1B-1:1
5.0 lnc-BUB1B-1:1
5.1 lnc-TMEM62-72:1
5.2 lnc-PAK6-1:2