Transcript: lnc-PAK6-1:3

Basic information

LNCipedia transcript ID: lnc-PAK6-1:3 
LNCipedia gene ID: lnc-PAK6-1
Location (hg38): chr15:40232082-40236107
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4026 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT041815; ENST00000568093.2
Alternative gene names: ENSG00000260648.2; RP11-133K1.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.7331 non-coding 
CPAT coding probability 42.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PAK6-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BUB1B-1:2
4.0 lnc-BUB1B-1:2
4.1 lnc-BUB1B-1:2
5.0 lnc-BUB1B-1:2
5.1 lnc-TMEM62-72:2
5.2 lnc-PAK6-1:3