Transcript: lnc-PAM-1:5

Basic information

LNCipedia transcript ID: lnc-PAM-1:5 
LNCipedia gene ID: lnc-PAM-1
Location (hg38): chr5:102694106-102754578
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 917 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_2985_chr5:102029809-102090282_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.269 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAM-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIP5K2-1:1
4.0 lnc-PAM-1:5
4.1 lnc-PAM-1:5
5.0 lnc-PAM-1:5
5.1 lnc-GPR150-109:1
5.2 lnc-PAM-1:5