Transcript: lnc-PAM-9:1

Basic information

LNCipedia transcript ID: lnc-PAM-9:1 
LNCipedia gene ID: lnc-PAM-9
Location (hg38): chr5:102666207-102722298
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 639 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010050; NONHSAT103038
Alternative gene names: XLOC_004495; linc-PAM-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.7481 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAM-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAM-1:1
3.1 lnc-PAM-1:1
4.0 lnc-PAM-9:1
4.1 lnc-PAM-9:1
5.0 lnc-PAM-9:1
5.1 lnc-GPR150-105:1
5.2 lnc-PAM-9:1