Transcript: lnc-PAMR1-3:8

Basic information

LNCipedia transcript ID: lnc-PAMR1-3:8 
LNCipedia gene ID: lnc-PAMR1-3
Ensembl Gene ID: ENSG00000254919
Ensembl Transcript ID: ENST00000531569
Location (hg38): chr11:35915051-35918718
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531569.1; RP11-698N11.2-001; OTTHUMT00000389185.1; NONHSAT018800
Alternative gene names: ENSG00000254919.1; RP11-698N11.2; OTTHUMG00000166331.2; AC090692.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -300.2671 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAMR1-3:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C11orf55-1:2
4.0 lnc-C11orf55-1:2
4.1 lnc-PAMR1-3:8
5.0 lnc-PAMR1-3:8
5.1 lnc-TRAF6-11:8
5.2 lnc-PAMR1-3:8