Transcript: lnc-PANK1-2:1

Basic information

LNCipedia transcript ID: lnc-PANK1-2:1 
LNCipedia gene ID: lnc-PANK1-2
Location (hg38): chr10:89667187-89701420
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1613 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00018020; ENST00000449882.1; RP11-80H5.4-001; OTTHUMT00000049323.1; NONHSAT015525
Alternative gene names: XLOC_008897; linc-PANK1-2; ENSG00000235100.2; RP11-80H5.4; OTTHUMG00000018720.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.5779 non-coding 
CPAT coding probability 7.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PANK1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PANK1-2:1
3.1 lnc-PANK1-2:1
4.0 lnc-PANK1-2:1
4.1 lnc-PANK1-2:1
5.0 lnc-PANK1-2:1
5.1 lnc-HTR7-17:6
5.2 lnc-PANK1-2:1