Transcript: lnc-PANK1-2:3

Basic information

LNCipedia transcript ID: lnc-PANK1-2:3 
LNCipedia gene ID: lnc-PANK1-2
Location (hg38): chr10:89691300-89697928
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3662 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00017692; NR_026835
Alternative gene names: XLOC_008897; linc-PANK1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.8161 non-coding 
CPAT coding probability 87.19% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PANK1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PANK1-2:2
3.1 lnc-PANK1-2:3
4.0 lnc-PANK1-2:3
4.1 lnc-PANK1-2:3
5.0 lnc-PANK1-2:3
5.1 lnc-HTR7-17:11
5.2 lnc-PANK1-2:3