Transcript: lnc-PANK3-10:1

Basic information

LNCipedia transcript ID: lnc-PANK3-10:1 
LNCipedia gene ID: lnc-PANK3-10
Ensembl Gene ID: ENSG00000253469
Ensembl Transcript ID: ENST00000518330
RefSeq ID: NR_134280
Location (hg38): chr5:167164934-167168401
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 630 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000518330; ENST00000518330.1; CTC-264O10.1-001; OTTHUMT00000371029.1; NONHSAT104966; NR_134280.1
Alternative gene names: ENSG00000253469; CTC-264O10.1; ENSG00000253469.1; OTTHUMG00000162918.1; AC091819.1; LOC101927908


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -300.375 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PANK3-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PANK3-2:1
3.1 lnc-PANK3-10:1
4.0 lnc-PANK3-10:1
4.1 lnc-PANK3-10:1
5.0 lnc-PANK3-10:1
5.1 lnc-FAM71B-58:1
5.2 lnc-PANK3-10:1