Transcript: lnc-PANO1-1:11

Basic information

LNCipedia transcript ID: lnc-PANO1-1:11 
LNCipedia gene ID: lnc-PANO1-1
Ensembl Gene ID: ENSG00000255142
Ensembl Transcript ID: ENST00000533938
Location (hg38): chr11:781645-782105
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 284 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533938.1; AP006621.6-001; OTTHUMT00000382844.1; NONHSAT017321
Alternative gene names: ENSG00000255142.1; AP006621.6; OTTHUMG00000165233.1; AP006621.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.5222 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PANO1-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TALDO1-1:1
4.0 lnc-AP006621.5.1-1:11
4.1 lnc-AP006621.5.1-1:11
5.0 lnc-AP006621.5.1-1:11
5.1 lnc-OR51M1-112:11
5.2 lnc-PANO1-1:11