Transcript: lnc-PAPPA-1:1

Basic information

LNCipedia transcript ID: lnc-PAPPA-1:1 
LNCipedia gene ID: lnc-PAPPA-1
Ensembl Gene ID: ENSG00000228707
Ensembl Transcript ID: ENST00000416507
Location (hg38): chr9:116012361-116012965
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 509 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015740; ENST00000416507; ENST00000416507.1; RP11-787B4.2-001; OTTHUMT00000053796.1; NONHSAT134429
Alternative gene names: XLOC_007534; linc-PAPPA-1; ENSG00000228707; RP11-787B4.2; ENSG00000228707.1; OTTHUMG00000020552.1; AL691426.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.3588 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAPPA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAPPA-1:1
3.1 lnc-PAPPA-1:1
4.0 lnc-PAPPA-1:1
4.1 lnc-PAPPA-1:1
5.0 lnc-PAPPA-1:1
5.1 lnc-PRPF4-71:5
5.2 lnc-PAPPA-1:1