Transcript: lnc-PAQR5-1:1

Basic information

LNCipedia transcript ID: lnc-PAQR5-1:1 
LNCipedia gene ID: lnc-PAQR5-1
Location (hg38): chr15:69278675-69288564
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000558269.1; RP11-352D13.5-001; OTTHUMT00000416782.1; NONHSAT046928
Alternative gene names: ENSG00000259504.1; RP11-352D13.5; OTTHUMG00000172085.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.7632 non-coding 
CPAT coding probability 5.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAQR5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GLCE-1:1
4.0 lnc-PAQR5-1:1
4.1 lnc-PAQR5-1:1
5.0 lnc-PAQR5-1:1
5.1 lnc-NOX5-6:1
5.2 lnc-PAQR5-1:1