Transcript: lnc-PARN-1:3

Basic information

LNCipedia transcript ID: lnc-PARN-1:3 
LNCipedia gene ID: lnc-PARN-1
Ensembl Gene ID: ENSG00000263257
Ensembl Transcript ID: ENST00000572479
Location (hg38): chr16:14408039-14418872
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572479.1; RP11-65J21.4-001; OTTHUMT00000436881.1; NONHSAT140694
Alternative gene names: ENSG00000263257.1; RP11-65J21.4; OTTHUMG00000177424.1; AC040173.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.0208 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PARN-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PARN-1:3
4.0 lnc-PARN-1:3
4.1 lnc-PARN-1:3
5.0 lnc-PARN-1:3
5.1 lnc-PARN-1:3
5.2 lnc-PARN-1:3