Transcript: lnc-PARVA-7:1

Basic information

LNCipedia transcript ID: lnc-PARVA-7:1 
LNCipedia gene ID: lnc-PARVA-7
Ensembl Gene ID: ENSG00000254983
Ensembl Transcript ID: ENST00000526616
Location (hg38): chr11:12303533-12308216
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 384 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526616.1; RP11-573E11.2-001; OTTHUMT00000386364.1; NONHSAT018052
Alternative gene names: ENSG00000254983.1; RP11-573E11.2; OTTHUMG00000165818.1; AC025300.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.2988 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PARVA-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MICAL2-3:1
4.0 lnc-MICAL2-3:1
4.1 lnc-MICAL2-3:1
5.0 lnc-MICAL2-3:1
5.1 lnc-AMPD3-29:1
5.2 lnc-PARVA-7:1