Transcript: lnc-PAWR-1:2

Basic information

LNCipedia transcript ID: lnc-PAWR-1:2 
LNCipedia gene ID: lnc-PAWR-1
Ensembl Gene ID: ENSG00000257894
Ensembl Transcript ID: ENST00000553165
Location (hg38): chr12:79393672-79503362
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 448 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553165; ENST00000553165.1; RP1-78O14.1-002; OTTHUMT00000407120.1; NONHSAT029642
Alternative gene names: ENSG00000257894; RP1-78O14.1; ENSG00000257894.1; OTTHUMG00000170063.1; ENSG00000257894.2; AC027288.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.2154 non-coding 
CPAT coding probability 2.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAWR-1:2 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAWR-1:2
3.1 lnc-PAWR-1:2
4.0 lnc-PAWR-1:2
4.1 lnc-PAWR-1:2
5.0 lnc-PAWR-1:2
5.1 lnc-CCDC59-28:2
5.2 lnc-PAWR-1:2