Transcript: lnc-PAWR-1:3

Basic information

LNCipedia transcript ID: lnc-PAWR-1:3 
LNCipedia gene ID: lnc-PAWR-1
Location (hg38): chr12:79392917-79455460
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1155 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000550268; ENST00000550268.1; RP1-78O14.1-003; OTTHUMT00000407119.1; NONHSAT029641
Alternative gene names: ENSG00000257894; RP1-78O14.1; ENSG00000257894.1; OTTHUMG00000170063.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.2524 non-coding 
CPAT coding probability 7.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAWR-1:3 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAWR-1:3
3.1 lnc-PAWR-1:3
4.0 lnc-PAWR-1:3
4.1 lnc-PAWR-1:3
5.0 lnc-PAWR-1:3
5.1 lnc-CCDC59-28:4
5.2 lnc-PAWR-1:3