Transcript: lnc-PAWR-1:4

Basic information

LNCipedia transcript ID: lnc-PAWR-1:4 
LNCipedia gene ID: lnc-PAWR-1
Ensembl Gene ID: ENSG00000257894
Ensembl Transcript ID: ENST00000550268
Location (hg38): chr12:79392252-79455460
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1820 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550268.2
Alternative gene names: ENSG00000257894.2; RP1-78O14.1; AC027288.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.2524 non-coding 
CPAT coding probability 5.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAWR-1:4 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PAWR-1:4
4.1 lnc-PAWR-1:4
5.0 lnc-PAWR-1:4
5.1 lnc-CCDC59-28:5
5.2 lnc-PAWR-1:4