Transcript: lnc-PAWR-1:5

Basic information

LNCipedia transcript ID: lnc-PAWR-1:5 
LNCipedia gene ID: lnc-PAWR-1
Location (hg38): chr12:79390200-79394430
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4231 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA325:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 34.2207 non-coding 
CPAT coding probability 4.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAWR-1:5 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PAWR-1:5
4.1 lnc-PAWR-1:5
5.0 lnc-PAWR-1:5
5.1 lnc-CCDC59-28:6
5.2 lnc-PAWR-1:5