Transcript: lnc-PAWR-4:1

Basic information

LNCipedia transcript ID: lnc-PAWR-4:1 
LNCipedia gene ID: lnc-PAWR-4
Ensembl Gene ID: ENSG00000257879
Ensembl Transcript ID: ENST00000547569
Location (hg38): chr12:78426826-78442952
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1010 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547569.1; RP11-90C1.1-001; OTTHUMT00000406851.1; NONHSAT029631
Alternative gene names: ENSG00000257879.1; RP11-90C1.1; OTTHUMG00000170010.1; AC130415.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.3184 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAWR-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAWR-4:1
4.0 lnc-PAWR-4:1
4.1 lnc-PAWR-4:1
5.0 lnc-PAWR-4:1
5.1 lnc-CCDC59-33:1
5.2 lnc-PAWR-4:1