Transcript: lnc-PAX5-2:1

Basic information

LNCipedia transcript ID: lnc-PAX5-2:1 
LNCipedia gene ID: lnc-PAX5-2
Ensembl Gene ID: ENSG00000260100
Ensembl Transcript ID: ENST00000569583
Location (hg38): chr9:37078813-37079776
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 964 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569583.1; RP11-220I1.5-001; OTTHUMT00000430764.1; NONHSAT131037
Alternative gene names: ENSG00000260100.1; RP11-220I1.5; OTTHUMG00000175668.1; AL512604.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.1513 non-coding 
CPAT coding probability 7.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAX5-2:1
4.0 lnc-PAX5-2:1
4.1 lnc-PAX5-2:1
5.0 lnc-PAX5-2:1
5.1 lnc-FBXO10-11:1
5.2 lnc-PAX5-2:1