Transcript: lnc-PAX5-3:1

Basic information

LNCipedia transcript ID: lnc-PAX5-3:1 
LNCipedia gene ID: lnc-PAX5-3
Location (hg38): chr9:37112918-37115490
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 944 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000426946.1; RP11-220I1.2-001; OTTHUMT00000052438.1
Alternative gene names: ENSG00000233242.1; RP11-220I1.2; OTTHUMG00000019911.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.3657 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX5-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAX5-3:1
4.0 lnc-PAX5-3:1
4.1 lnc-PAX5-3:1
5.0 lnc-PAX5-3:1
5.1 lnc-FBXO10-9:3
5.2 lnc-PAX5-3:1