Transcript: lnc-PAX6-2:7

Basic information

LNCipedia transcript ID: lnc-PAX6-2:7 
LNCipedia gene ID: lnc-PAX6-2
RefSeq ID: NR_120527
Location (hg38): chr11:32040067-32041318
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 522 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120527; NR_120527.1
Alternative gene names: LOC100506675


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -253.4606 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX6-2:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAX6-2:7
4.0 lnc-PAX6-2:7
4.1 lnc-PAX6-2:7
5.0 lnc-PAX6-2:7
5.1 lnc-CSTF3-14:6
5.2 lnc-PAX6-2:7