Transcript: lnc-PAX6-2:8

Basic information

LNCipedia transcript ID: lnc-PAX6-2:8 
LNCipedia gene ID: lnc-PAX6-2
RefSeq ID: NR_120526
Location (hg38): chr11:32035979-32041318
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 822 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120526; NR_120526.1
Alternative gene names: LOC100506675


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -54.8275 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX6-2:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAX6-2:8
4.0 lnc-PAX6-2:8
4.1 lnc-PAX6-2:8
5.0 lnc-PAX6-2:8
5.1 lnc-CSTF3-14:7
5.2 lnc-PAX6-2:8