Transcript: lnc-PAX8-2:1

Basic information

LNCipedia transcript ID: lnc-PAX8-2:1 
LNCipedia gene ID: lnc-PAX8-2
Location (hg38): chr2:113055680-113374994
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 525 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000049695.1|FTMT20500058848.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.0742 non-coding 
CPAT coding probability 18.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAX8-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PAX8-2:1
5.0 lnc-PAX8-2:1
5.1 lnc-EN1-44:1
5.2 lnc-PAX8-2:1