Transcript: lnc-PAXIP1-3:5

Basic information

LNCipedia transcript ID: lnc-PAXIP1-3:5 
LNCipedia gene ID: lnc-PAXIP1-3
Ensembl Gene ID: ENSG00000270114
Ensembl Transcript ID: ENST00000446335
Location (hg38): chr7:154026287-154038604
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 698 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446335.1; AC006019.3-003; OTTHUMT00000322989.1; NONHSAT124309
Alternative gene names: ENSG00000203335.3; AC006019.3; OTTHUMG00000151520.1; ENSG00000270114.1; RP5-1048B16.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.7496 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PAXIP1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PAXIP1-3:5
4.0 lnc-PAXIP1-3:5
4.1 lnc-PAXIP1-3:5
5.0 lnc-PAXIP1-3:5
5.1 lnc-PAXIP1-3:5
5.2 lnc-PAXIP1-3:5