Transcript: lnc-PBX3-6:1

Basic information

LNCipedia transcript ID: lnc-PBX3-6:1 
LNCipedia gene ID: lnc-PBX3-6
Ensembl Gene ID: ENSG00000232413
Ensembl Transcript ID: ENST00000441473
Location (hg38): chr9:126057580-126159613
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 316 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015752; ENST00000441473; ENST00000441473.1; RP11-343J18.2-001; OTTHUMT00000054108.1; NONHSAT134759
Alternative gene names: XLOC_007566; linc-FAM125B; ENSG00000232413; RP11-343J18.2; ENSG00000232413.1; OTTHUMG00000020685.1; AL589923.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.9851 non-coding 
CPAT coding probability 2.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PBX3-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PBX3-2:1
3.1 lnc-PBX3-3:1
4.0 lnc-PBX3-3:1
4.1 lnc-PBX3-3:1
5.0 lnc-PBX3-3:1
5.1 lnc-PTPA-141:1
5.2 lnc-PBX3-6:1