Transcript: lnc-PCBP4-1:1

Basic information

LNCipedia transcript ID: lnc-PCBP4-1:1 
LNCipedia gene ID: lnc-PCBP4-1
Ensembl Gene ID: ENSG00000272762
Ensembl Transcript ID: ENST00000488257
Location (hg38): chr3:51961212-51974031
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 547 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000488257.1; RP11-155D18.12-001; OTTHUMT00000349675.1; ENST00000488257.2
Alternative gene names: ENSG00000254782.1; RP11-155D18.12; OTTHUMG00000161549.1; ENSG00000272762.5; AC115284.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 305.1356 coding 
CPAT coding probability 94.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PCBP4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCBP4-1:1
4.0 lnc-PCBP4-1:1
4.1 lnc-PCBP4-1:1
5.0 lnc-PCBP4-1:1
5.1 lnc-HYAL3-27:1
5.2 lnc-PCBP4-1:1