Transcript: lnc-PCCA-6:2

Basic information

LNCipedia transcript ID: lnc-PCCA-6:2 
LNCipedia gene ID: lnc-PCCA-6
Location (hg38): chr13:100675060-100677673
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2614 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000015958.1|HBMT00000387737.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.3815 non-coding 
CPAT coding probability 13.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCCA-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PCCA-6:2
5.0 lnc-PCCA-6:2
5.1 lnc-COL4A2-77:3
5.2 lnc-PCCA-6:2