Transcript: lnc-PCDH17-1:1

Basic information

LNCipedia transcript ID: lnc-PCDH17-1:1 
LNCipedia gene ID: lnc-PCDH17-1
Location (hg38): chr13:58211691-58233117
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 807 bp
Exons: 7
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021555; ENST00000454780; ENST00000454780.1; RP11-538C21.1-001; OTTHUMT00000045157.1; NONHSAT034074
Alternative gene names: XLOC_010402; linc-TDRD3-2; ENSG00000232954; RP11-538C21.1; ENSG00000232954.1; OTTHUMG00000016997.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.7827 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH17-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH17-1:1
3.1 lnc-PCDH17-1:1
4.0 lnc-PCDH17-1:1
4.1 lnc-PCDH17-1:1
5.0 lnc-PCDH17-1:1
5.1 lnc-KL-253:1
5.2 lnc-PCDH17-1:1