Transcript: lnc-PCDH7-12:1

Basic information

LNCipedia transcript ID: lnc-PCDH7-12:1 
LNCipedia gene ID: lnc-PCDH7-12
Ensembl Gene ID: ENSG00000248417
Ensembl Transcript ID: ENST00000515263
Location (hg38): chr4:33433510-33437877
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 332 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007506; ENST00000515263; ENST00000515263.1; RP11-802H3.2-001; OTTHUMT00000360336.1; NONHSAT095961
Alternative gene names: XLOC_003500; linc-DTHD1-6; ENSG00000248417; RP11-802H3.2; ENSG00000248417.1; OTTHUMG00000160350.1; AC097535.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.7077 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDH7-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH7-12:1
3.1 lnc-PCDH7-12:1
4.0 lnc-PCDH7-12:1
4.1 lnc-PCDH7-12:1
5.0 lnc-PCDH7-12:1
5.1 lnc-GABRB1-105:1
5.2 lnc-PCDH7-12:1