Transcript: lnc-PCDHGA1-1:3

Basic information

LNCipedia transcript ID: lnc-PCDHGA1-1:3 
LNCipedia gene ID: lnc-PCDHGA1-1
Ensembl Gene ID: ENSG00000246422
Ensembl Transcript ID: ENST00000502205
Location (hg38): chr5:141558311-141565263
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2480 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502205.2; CTD-2024I7.13-001; OTTHUMT00000377502.1; NONHSAT104260
Alternative gene names: ENSG00000246422.2; CTD-2024I7.13; OTTHUMG00000164151.1; AC008781.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.426 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDHGA1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PCDHGA1-1:1
4.0 lnc-PCDHGC5-1:1
4.1 lnc-PCDHGC5-1:1
5.0 lnc-PCDHGC5-1:1
5.1 lnc-PCDHGA7-1:1
5.2 lnc-PCDHGA1-1:3