Transcript: lnc-PCDHGA1-2:7

Basic information

LNCipedia transcript ID: lnc-PCDHGA1-2:7 
LNCipedia gene ID: lnc-PCDHGA1-2
Location (hg38): chr5:141326240-141327084
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 767 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272070.1|FTMT21900007542.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -48.0956 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCDHGA1-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PCDHGA1-2:7
5.0 lnc-PCDHGA1-2:7
5.1 lnc-PCDHGA3-2:3
5.2 lnc-PCDHGA1-2:7