Transcript: lnc-PCED1B-5:23

Basic information

LNCipedia transcript ID: lnc-PCED1B-5:23 
LNCipedia gene ID: lnc-PCED1B-5
Location (hg38): chr12:46387169-46669950
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1199 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272369.1|FTMT24700034886.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.7355 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCED1B-5:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FAM113B-5:31
5.0 lnc-FAM113B-5:31
5.1 lnc-PCED1B-16:23
5.2 lnc-PCED1B-5:23