Transcript: lnc-PCED1B-5:28

Basic information

LNCipedia transcript ID: lnc-PCED1B-5:28 
LNCipedia gene ID: lnc-PCED1B-5
Ensembl Gene ID: ENSG00000257261
Ensembl Transcript ID: ENST00000611243
Location (hg38): chr12:46387747-46876159
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1569 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611243.1
Alternative gene names: ENSG00000257261.5; RP11-96H19.1; AC008014.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -143.8693 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCED1B-5:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FAM113B-5:22
4.1 lnc-FAM113B-5:22
5.0 lnc-FAM113B-5:22
5.1 lnc-PCED1B-16:28
5.2 lnc-PCED1B-5:28