Transcript: lnc-PCED1B-5:33

Basic information

LNCipedia transcript ID: lnc-PCED1B-5:33 
LNCipedia gene ID: lnc-PCED1B-5
Location (hg38): chr12:46455091-46484528
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 232 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020394; NONHSAT027885
Alternative gene names: XLOC_009723; linc-FAM113B-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCED1B-5:33 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARID2-2:7
3.1 lnc-ARID2-3:9
4.0 lnc-FAM113B-5:25
4.1 lnc-FAM113B-5:25
5.0 lnc-FAM113B-5:25
5.1 lnc-PCED1B-16:33
5.2 lnc-PCED1B-5:33