Transcript: lnc-PCED1B-5:39

Basic information

LNCipedia transcript ID: lnc-PCED1B-5:39 
LNCipedia gene ID: lnc-PCED1B-5
Ensembl Gene ID: ENSG00000272369
Ensembl Transcript ID: ENST00000607353
Location (hg38): chr12:46537502-46652550
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 448 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607353.1
Alternative gene names: ENSG00000272369.1; RP11-446N19.1; AC008035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.4487 non-coding 
CPAT coding probability 9.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCED1B-5:39 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARID2-3:17
4.0 lnc-FAM113B-5:27
4.1 lnc-FAM113B-5:27
5.0 lnc-FAM113B-5:27
5.1 lnc-PCED1B-16:39
5.2 lnc-PCED1B-5:39