Transcript: lnc-PCED1B-5:40

Basic information

LNCipedia transcript ID: lnc-PCED1B-5:40 
LNCipedia gene ID: lnc-PCED1B-5
Location (hg38): chr12:46874814-46876795
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020396; NONHSAT027892
Alternative gene names: XLOC_009725; linc-FAM113B-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.8693 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCED1B-5:40 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM113B-5:1
3.1 lnc-FAM113B-5:1
4.0 lnc-FAM113B-5:1
4.1 lnc-FAM113B-5:1
5.0 lnc-FAM113B-5:1
5.1 lnc-PCED1B-16:40
5.2 lnc-PCED1B-5:40