Transcript: lnc-PCED1B-5:5

Basic information

LNCipedia transcript ID: lnc-PCED1B-5:5 
LNCipedia gene ID: lnc-PCED1B-5
RefSeq ID: NR_125380
Location (hg38): chr12:46383676-46652579
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125380; NR_125380.1
Alternative gene names: LOC100288798


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -126.4487 non-coding 
CPAT coding probability 4.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCED1B-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARID2-3:19
4.0 lnc-FAM113B-5:6
4.1 lnc-FAM113B-5:6
5.0 lnc-FAM113B-5:6
5.1 lnc-PCED1B-16:5
5.2 lnc-PCED1B-5:5