Transcript: lnc-PCED1B-5:8

Basic information

LNCipedia transcript ID: lnc-PCED1B-5:8 
LNCipedia gene ID: lnc-PCED1B-5
Ensembl Gene ID: ENSG00000257261
Ensembl Transcript ID: ENST00000551503
Location (hg38): chr12:46383679-46456268
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 829 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551503.1; RP11-96H19.1-001; OTTHUMT00000404240.1; NONHSAT027866; ENST00000551503.5
Alternative gene names: ENSG00000257261.1; RP11-96H19.1; OTTHUMG00000169473.1; ENSG00000257261.5; AC008014.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.864 non-coding 
CPAT coding probability 12.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PCED1B-5:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARID2-3:2
4.0 lnc-FAM113B-5:9
4.1 lnc-FAM113B-5:9
5.0 lnc-FAM113B-5:9
5.1 lnc-PCED1B-16:8
5.2 lnc-PCED1B-5:8